jebl.evolution.align
Interfaces 
MultipleAligner
PairwiseAligner
TracebackPlotter
Classes 
Align
AlignCommand
AlignmentTreeBuilderFactory
AlignmentTreeBuilderFactory.Result
BartonSternberg
MaximalSegmentPair
NeedlemanWunsch
NeedlemanWunschAffine
NeedlemanWunschLinearSpace
NeedlemanWunschLinearSpaceAffine
NonOverlapMultipleLocalAffine
OldNeedlemanWunschAffine
Output
OverlapAlign
PairwiseAligner.Result
ProfileCharacter
SequenceAlignmentsDistanceMatrix
SequenceShuffler
SmithWaterman
SmithWatermanLinearSpace
SmithWatermanLinearSpaceAffine
Traceback