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Packages that use GeneticCode | |
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jebl.evolution.sequences |
Uses of GeneticCode in jebl.evolution.sequences |
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Fields in jebl.evolution.sequences declared as GeneticCode | |
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static GeneticCode |
GeneticCode.ALT_YEAST
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static GeneticCode |
GeneticCode.ASCIDIAN_MT
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static GeneticCode |
GeneticCode.BACTERIAL
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static GeneticCode |
GeneticCode.BLEPHARISMA_NUC
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static GeneticCode |
GeneticCode.CILIATE
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static GeneticCode |
GeneticCode.ECHINODERM_MT
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static GeneticCode |
GeneticCode.EUPLOTID_NUC
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static GeneticCode |
GeneticCode.FLATWORM_MT
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static GeneticCode[] |
GeneticCode.GENETIC_CODES
Deprecated. use getGeneticCodes() instead |
static GeneticCode |
GeneticCode.INVERTEBRATE_MT
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static GeneticCode |
GeneticCode.MOLD_PROTOZOAN_MT
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static GeneticCode |
GeneticCode.MYCOPLASMA
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static GeneticCode |
GeneticCode.UNIVERSAL
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static GeneticCode |
GeneticCode.VERTEBRATE_MT
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static GeneticCode |
GeneticCode.YEAST
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Methods in jebl.evolution.sequences that return GeneticCode | |
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static GeneticCode[] |
GeneticCode.getGeneticCodesArray()
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static GeneticCode |
GeneticCode.valueOf(int NCBITranslationTableNumber)
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static GeneticCode |
GeneticCode.valueOf(java.lang.String name)
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Methods in jebl.evolution.sequences that return types with arguments of type GeneticCode | |
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static java.lang.Iterable<GeneticCode> |
GeneticCode.getGeneticCodes()
Returns an iterable that allows you to iterate over all the standard genetic codes |
Methods in jebl.evolution.sequences with parameters of type GeneticCode | |
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static Sequence |
Utils.translate(Sequence sequence,
GeneticCode geneticCode)
Translates a given Sequence to a corresponding Sequence under the given genetic code. |
static AminoAcidState[] |
Utils.translate(State[] states,
GeneticCode geneticCode)
Translates each of a given sequence of NucleotideState s or CodonState s
to the AminoAcidState corresponding to it under the given genetic code. |
static java.lang.String |
Utils.translate(java.lang.String nucleotideSequence,
GeneticCode geneticCode)
A wrapper for Utils.translateCharSequence(CharSequence,GeneticCode)
that takes a nucleotide sequence as a String only rather than a
CharSequence. |
static java.lang.String |
Utils.translateCharSequence(java.lang.CharSequence nucleotideSequence,
GeneticCode geneticCode)
Translates the given nucleotideSequence into an amino acid sequence string, using the given geneticCode. |
Constructors in jebl.evolution.sequences with parameters of type GeneticCode | |
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TranslatedSequence(Sequence source,
GeneticCode geneticCode)
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