Uses of Class
jebl.evolution.trees.TreeBuilderFactory.DistanceModel

Packages that use TreeBuilderFactory.DistanceModel
jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences. 
jebl.evolution.trees   
 

Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align
 

Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModel
static TreeBuilderFactory.DistanceModel SequenceAlignmentsDistanceMatrix.getDefaultDistanceModel(java.util.List<Sequence> seqs)
           
 

Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)
           
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
           
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)
           
 

Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel
SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model)
           
 

Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees
 

Methods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModel
static TreeBuilderFactory.DistanceModel TreeBuilderFactory.DistanceModel.valueOf(java.lang.String name)
          Returns the enum constant of this type with the specified name.
static TreeBuilderFactory.DistanceModel[] TreeBuilderFactory.DistanceModel.values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 



http://code.google.com/p/jebl2/