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addFeedbackAction(label,"",listener)
ByteBuilder.isCharacterAscii(char)
) to this ByteBuilder.
ProgressListener
implementation that allows the caller to set the canceled
status.CompositeProgressListener.beginNextSubtask()
.
CompositeProgressListener.beginNextSubtask()
.
maxCapacity
bytes in length.
BasicProgressListener.isCanceled()
will return true.
Codons
.ProgressListener
that is suitable for a task that consists of several subtasks.TreeBuilder
that builds a consensus tree for a set of trees on identical leaf sets.ProgressListener.isCanceled()
.
MEGAExporter.exportAlignment(jebl.evolution.alignments.Alignment, String)
instead.
GeneticCode.getGeneticCodes()
instead
AminoAcids
to which that triplet is translated in this genetic code.
ImportHelper.getMetaComments()
instead
State.getFullName()
or State.getCode()
.
List trees = new ArrayList();
while (hasTree()) {
trees.add(importNextTree());
}
return whether another tree is available.
ProgressListener.addFeedbackAction(String, jebl.util.SimpleListener)
.
setProgress(((double)currentStep)/numberOfSteps)
setProgress(((double)currentStep)/numberOfSteps)
Sequence
to a corresponding Sequence
under the given genetic code.
NucleotideState
s or CodonState
s
to the AminoAcidState
corresponding to it under the given genetic code.
Utils.translateCharSequence(CharSequence,GeneticCode)
that takes a nucleotide sequence as a String only rather than a
CharSequence.
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