Package jebl.evolution.sequences

Interface Summary
Sequence A biomolecular sequence.
Sequences A set of sequence objects.
SequenceType Interface for sequences data types.
StateClassification  
 

Class Summary
AminoAcids Uninstantiable utility class with only static methods.
AminoAcidState  
BasicSequence A default implementation of the Sequence interface.
CanonicalSequence A default implementation of the Sequence interface that converts sequence characters to States such that calling getString() will always return uppercase residues with nucleotide U residues converted to T
Codons  
CodonState As of 2007-07-30, instances of this class are only constructed for non-ambigous nucleotide triplets - see Codons.
FilteredSequence  
GaplessSequence  
GeneticCode A set of standard genetic codes.
Nucleotides Uninstantiable utility class with only static methods.
NucleotideState  
SequenceTester  
SequenceType.Utils  
State  
StateClassification.Default  
TranslatedSequence  
Utils  
 

Exception Summary
SequenceStateException  
 



http://code.google.com/p/jebl2/