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java.lang.Objectjebl.evolution.substmodel.AbstractRateMatrix
jebl.evolution.substmodel.AminoAcidModel
public abstract class AminoAcidModel
base class of rate matrices for amino acids
Method Summary |
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Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix |
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getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Methods inherited from interface jebl.evolution.substmodel.RateMatrix |
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getUniqueName |
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