Uses of Interface
jebl.evolution.coalescent.DemographicFunction

Packages that use DemographicFunction
jebl.evolution.coalescent   
jebl.evolution.treesimulation   
 

Uses of DemographicFunction in jebl.evolution.coalescent
 

Classes in jebl.evolution.coalescent that implement DemographicFunction
 class CataclysmicDemographic
          This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
 class ConstantPopulation
          This class models coalescent intervals for a constant population (parameter: N0=present-day population size).
 class ConstExponential
          This class models exponential growth from an initial population size.
 class ConstLogistic
          This class models logistic growth from an initial population size.
 class EmpiricalDemographicFunction
           
 class Expansion
          This class models exponential growth from an initial ancestral population size.
 class ExponentialGrowth
          This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
 class ExponentialLogistic
          This class models logistic growth from an initial exponential phase.
 class LogisticGrowth
          This class models logistic growth.
 

Methods in jebl.evolution.coalescent with parameters of type DemographicFunction
static double Coalescent.calculateLogLikelihood(IntervalList intervals, DemographicFunction demographicFunction)
          Calculates the log likelihood of this set of coalescent intervals, given a demographic model.
static void DemographicFunction.Utils.testConsistency(DemographicFunction demographicFunction, int steps, double maxTime)
          This function tests the consistency of the getIntensity and getInverseIntensity methods of this demographic model.
 

Constructors in jebl.evolution.coalescent with parameters of type DemographicFunction
Coalescent(IntervalList intervals, DemographicFunction demographicFunction)
           
Coalescent(RootedTree tree, DemographicFunction demographicFunction)
           
 

Uses of DemographicFunction in jebl.evolution.treesimulation
 

Constructors in jebl.evolution.treesimulation with parameters of type DemographicFunction
CoalescentIntervalGenerator(DemographicFunction demographicFunction)
           
 



http://code.google.com/p/jebl2/