Uses of Class
jebl.evolution.align.AlignmentTreeBuilderFactory.Result

Packages that use AlignmentTreeBuilderFactory.Result
jebl.evolution.align Provides classes and interfaces for pairwise alignment of two sequences. 
 

Uses of AlignmentTreeBuilderFactory.Result in jebl.evolution.align
 

Methods in jebl.evolution.align that return AlignmentTreeBuilderFactory.Result
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)
           
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
           
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, MultipleAligner aligner, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
           
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener)
          Will use model F84 for nucleotides and Jukes-Cantor for amino acid
static AlignmentTreeBuilderFactory.Result AlignmentTreeBuilderFactory.build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)
           
 



http://code.google.com/p/jebl2/