jebl.evolution.alignments
Interface Alignment

All Superinterfaces:
Patterns, Sequences
All Known Implementing Classes:
BasicAlignment, BootstrappedAlignment, JackknifedAlignment, ResampledAlignment

public interface Alignment
extends Sequences, Patterns

Version:
$Id: Alignment.java 314 2006-05-03 01:21:14Z alexeidrummond $
Author:
Andrew Rambaut, Alexei Drummond

Method Summary
 java.util.List<Sequence> getSequenceList()
           
 int getSiteCount()
           
 
Methods inherited from interface jebl.evolution.sequences.Sequences
getSequence, getSequences
 
Methods inherited from interface jebl.evolution.alignments.Patterns
getPatternCount, getPatternLength, getPatterns, getSequenceType, getTaxa
 

Method Detail

getSequenceList

java.util.List<Sequence> getSequenceList()

getSiteCount

int getSiteCount()


http://code.google.com/p/jebl2/