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Packages that use TreeBuilderFactory.DistanceModel | |
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jebl.evolution.align | Provides classes and interfaces for pairwise alignment of two sequences. |
jebl.evolution.trees |
Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align |
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Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModel | |
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static TreeBuilderFactory.DistanceModel |
SequenceAlignmentsDistanceMatrix.getDefaultDistanceModel(java.util.List<Sequence> seqs)
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Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel | |
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static AlignmentTreeBuilderFactory.Result |
AlignmentTreeBuilderFactory.build(Alignment alignment,
TreeBuilderFactory.Method method,
TreeBuilderFactory.DistanceModel model,
ProgressListener progressListener)
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static AlignmentTreeBuilderFactory.Result |
AlignmentTreeBuilderFactory.build(Alignment alignment,
TreeBuilderFactory.Method method,
TreeBuilderFactory.DistanceModel model,
ProgressListener progressListener,
boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
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static AlignmentTreeBuilderFactory.Result |
AlignmentTreeBuilderFactory.build(java.util.List<Sequence> seqs,
TreeBuilderFactory.Method method,
PairwiseAligner aligner,
ProgressListener progressListener,
TreeBuilderFactory.DistanceModel model)
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Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel | |
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SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs,
PairwiseAligner aligner,
ProgressListener progress,
TreeBuilderFactory.DistanceModel model)
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Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees |
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Methods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModel | |
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static TreeBuilderFactory.DistanceModel |
TreeBuilderFactory.DistanceModel.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name. |
static TreeBuilderFactory.DistanceModel[] |
TreeBuilderFactory.DistanceModel.values()
Returns an array containing the constants of this enum type, in the order they are declared. |
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