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Packages that use Edge | |
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jebl.evolution.graphs | |
jebl.evolution.trees |
Uses of Edge in jebl.evolution.graphs |
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Methods in jebl.evolution.graphs that return Edge | |
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Edge |
Graph.getEdge(Node node1,
Node node2)
Returns the Edge that connects these two nodes |
Methods in jebl.evolution.graphs that return types with arguments of type Edge | |
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java.util.Set<Edge> |
Graph.getEdges()
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java.util.List<Edge> |
Graph.getEdges(Node node)
Returns a list of edges connected to this node |
Methods in jebl.evolution.graphs with parameters of type Edge | |
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Node[] |
Graph.getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge. |
Uses of Edge in jebl.evolution.trees |
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Classes in jebl.evolution.trees that implement Edge | |
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class |
BaseEdge
Common implementation of Attributable interface used by Nodes. |
Methods in jebl.evolution.trees that return Edge | |
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Edge |
MutableRootedTree.getEdge(Node node1,
Node node2)
Returns the Edge that connects these two nodes |
Edge |
CompactRootedTree.getEdge(Node node1,
Node node2)
|
Edge |
RootedFromUnrooted.getEdge(Node node1,
Node node2)
|
Edge |
RootedSubtree.getEdge(Node node1,
Node node2)
Returns the Edge that connects these two nodes |
Edge |
FilteredRootedTree.getEdge(Node node1,
Node node2)
|
Edge |
SimpleTree.getEdge(Node node1,
Node node2)
Returns the Edge that connects these two nodes |
Edge |
SimpleRootedTree.getEdge(Node node1,
Node node2)
Returns the Edge that connects these two nodes |
Edge |
MutableRootedTree.getParentEdge(Node node)
|
Edge |
CompactRootedTree.getParentEdge(Node node)
|
Edge |
RootedSubtree.getParentEdge(Node node)
|
Edge |
SimpleRootedTree.getParentEdge(Node node)
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Methods in jebl.evolution.trees that return types with arguments of type Edge | |
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java.util.Set<Edge> |
MutableRootedTree.getEdges()
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java.util.Set<Edge> |
CompactRootedTree.getEdges()
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java.util.Set<Edge> |
RootedFromUnrooted.getEdges()
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java.util.Set<Edge> |
RootedSubtree.getEdges()
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java.util.Set<Edge> |
FilteredRootedTree.getEdges()
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java.util.Set<Edge> |
SimpleTree.getEdges()
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java.util.Set<Edge> |
SimpleRootedTree.getEdges()
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java.util.List<Edge> |
MutableRootedTree.getEdges(Node node)
Returns a list of edges connected to this node |
java.util.List<Edge> |
CompactRootedTree.getEdges(Node node)
|
java.util.List<Edge> |
RootedFromUnrooted.getEdges(Node node)
Returns a list of edges connected to this node |
java.util.List<Edge> |
RootedSubtree.getEdges(Node node)
Returns a list of edges connected to this node |
java.util.List<Edge> |
FilteredRootedTree.getEdges(Node node)
|
java.util.List<Edge> |
SimpleTree.getEdges(Node node)
Returns a list of edges connected to this node |
java.util.List<Edge> |
SimpleRootedTree.getEdges(Node node)
Returns a list of edges connected to this node |
java.util.Set<Edge> |
MutableRootedTree.getExternalEdges()
The set of external edges. |
java.util.Set<Edge> |
Tree.getExternalEdges()
|
java.util.Set<Edge> |
CompactRootedTree.getExternalEdges()
|
java.util.Set<Edge> |
RootedFromUnrooted.getExternalEdges()
The set of external edges. |
java.util.Set<Edge> |
RootedSubtree.getExternalEdges()
The set of external edges. |
java.util.Set<Edge> |
FilteredRootedTree.getExternalEdges()
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java.util.Set<Edge> |
SimpleTree.getExternalEdges()
The set of external edges. |
java.util.Set<Edge> |
SimpleRootedTree.getExternalEdges()
The set of external edges. |
java.util.Set<Edge> |
MutableRootedTree.getInternalEdges()
The set of internal edges. |
java.util.Set<Edge> |
Tree.getInternalEdges()
|
java.util.Set<Edge> |
CompactRootedTree.getInternalEdges()
|
java.util.Set<Edge> |
RootedFromUnrooted.getInternalEdges()
The set of internal edges. |
java.util.Set<Edge> |
RootedSubtree.getInternalEdges()
The set of internal edges. |
java.util.Set<Edge> |
FilteredRootedTree.getInternalEdges()
|
java.util.Set<Edge> |
SimpleTree.getInternalEdges()
The set of internal edges. |
java.util.Set<Edge> |
SimpleRootedTree.getInternalEdges()
The set of internal edges. |
Methods in jebl.evolution.trees with parameters of type Edge | |
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Node |
SimpleRootedTree.addNode(Edge edge)
Adds a new node at the midpoint of the given edge |
Node[] |
MutableRootedTree.getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge. |
Node[] |
CompactRootedTree.getNodes(Edge edge)
|
Node[] |
RootedFromUnrooted.getNodes(Edge edge)
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Node[] |
RootedSubtree.getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge. |
Node[] |
FilteredRootedTree.getNodes(Edge edge)
|
Node[] |
SimpleTree.getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge. |
Node[] |
SimpleRootedTree.getNodes(Edge edge)
Returns an array of 2 nodes which are the nodes at either end of the edge. |
static void |
SplitUtils.getSplit(java.util.List<Taxon> taxa,
Tree tree,
Edge edge,
boolean[] split)
get split for branch associated with internal node |
boolean |
SimpleTree.isExternal(Edge edge)
|
void |
SimpleTree.setEdgeLength(Edge edge,
double length)
Change length of an existing edge. |
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