jebl.evolution.substmodel
Class AminoAcidModel

java.lang.Object
  extended by jebl.evolution.substmodel.AbstractRateMatrix
      extended by jebl.evolution.substmodel.AminoAcidModel
All Implemented Interfaces:
java.io.Serializable, java.lang.Cloneable, RateMatrix
Direct Known Subclasses:
WAG

public abstract class AminoAcidModel
extends AbstractRateMatrix

base class of rate matrices for amino acids

Version:
$Id: AminoAcidModel.java 185 2006-01-23 23:03:18Z rambaut $
Author:
Korbinian Strimmer
See Also:
Serialized Form

Method Summary
 
Methods inherited from class jebl.evolution.substmodel.AbstractRateMatrix
getDimension, getEquilibriumFrequencies, getEquilibriumFrequency, getRelativeRates, getSequenceType, getTransitionProbabilities, getTransitionProbability, rebuild, scale, setDistance, setDistanceTranspose, setParametersNoScale
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface jebl.evolution.substmodel.RateMatrix
getUniqueName
 



http://code.google.com/p/jebl2/