Probabilistic FSL atlases
Methods
find(*args, **kwargs) | Just a shortcut to the only level. |
get_map(target[, strategy, axes_order]) | Return a probability map as an array |
get_maps(target[, axes_order, key_attr, ...]) | Return a dictionary of probability maps for the target |
label_point(coord[, levels]) | Return labels for the given spatial point at specified levels |
label_voxel(c[, levels]) | Return labels for the voxel |
levels_listing() | |
load_atlas(filename) | Load atlas from a file |
query(index[, query_voxel]) | Generic query method. |
set_coordT(coordT) | Set coordT transformation. |
Parameters: | thr : float
strategy : str
sort : bool
filename : str
resolution : None or float
image_file : None or str
coordT :
default_levels : None or slice or list of int
load_maps : bool
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Methods
find(*args, **kwargs) | Just a shortcut to the only level. |
get_map(target[, strategy, axes_order]) | Return a probability map as an array |
get_maps(target[, axes_order, key_attr, ...]) | Return a dictionary of probability maps for the target |
label_point(coord[, levels]) | Return labels for the given spatial point at specified levels |
label_voxel(c[, levels]) | Return labels for the voxel |
levels_listing() | |
load_atlas(filename) | Load atlas from a file |
query(index[, query_voxel]) | Generic query method. |
set_coordT(coordT) | Set coordT transformation. |
Just a shortcut to the only level.
See find for more info
Return a probability map as an array
Parameters: | target : int or str or re._pattern_type
strategy : str in (‘unique’, ‘max’)
axes_order : str in (‘xyz’, ‘zyx’)
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Return a dictionary of probability maps for the target
Each key is a Label instance, and value is the probability map
Parameters: | target : str or re._pattern_type
axes_order : str in (‘xyz’, ‘zyx’)
key_attr : None or str overlaps : None or {‘max’}
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Return labels for the voxel
Parameters: | c : tuple of coordinates (xyz) - levels : just for API consistency (heh heh). Must be 0 for FSL atlases |
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