17 #ifndef __Speckley_DOMAIN_H__ 18 #define __Speckley_DOMAIN_H__ 20 #include <boost/python/tuple.hpp> 21 #include <boost/python/list.hpp> 23 #include <speckley/Speckley.h> 24 #include <speckley/SpeckleyException.h> 25 #include <speckley/AbstractAssembler.h> 26 #include <speckley/domainhelpers.h> 28 #include <escript/AbstractContinuousDomain.h> 29 #include <escript/Data.h> 30 #include <escript/FunctionSpace.h> 31 #include <escript/SubWorld.h> 44 typedef std::map<std::string, int>
simap_t;
117 MPI_Barrier(m_mpiInfo->comm);
138 virtual bool isValidFunctionSpaceType(
int fsType)
const;
144 virtual std::string functionSpaceTypeAsString(
int fsType)
const;
150 virtual int getDim()
const {
return m_numDim; }
161 return !(operator==(other));
170 virtual std::pair<int,dim_t> getDataShape(
int fsType)
const;
178 int getTagFromSampleNo(
int fsType,
dim_t sampleNo)
const;
186 virtual void setTagMap(
const std::string& name,
int tag) {
187 m_tagMap[name] = tag;
195 virtual int getTag(
const std::string& name)
const {
196 if (m_tagMap.find(name) != m_tagMap.end()) {
197 return m_tagMap.find(name)->second;
209 return (m_tagMap.find(name)!=m_tagMap.end());
216 virtual std::string showTagNames()
const;
238 virtual bool probeInterpolationOnDomain(
int fsType_source,
239 int fsType_target)
const;
248 virtual signed char preferredInterpolationOnDomain(
int fsType_source,
249 int fsType_target)
const;
258 commonFunctionSpace(
const std::vector<int>& fs,
int& resultcode)
const;
313 virtual void setTags(
int fsType,
int newTag,
const escript::Data& mask)
const;
320 virtual bool isCellOriented(
int fsType)
const;
328 virtual StatusType
getStatus()
const {
return m_status; }
334 virtual int getNumberOfTagsInUse(
int fsType)
const;
340 virtual const int* borrowListOfTagsInUse(
int fsType)
const;
346 virtual bool canTag(
int fsType)
const;
467 virtual int getSystemMatrixTypeId(
const boost::python::object& options)
const;
478 virtual int getTransportTypeId(
int solver,
int preconditioner,
int package,
479 bool symmetry)
const;
496 Assembler_ptr assembler)
const;
504 Assembler_ptr assembler)
const;
512 Assembler_ptr assembler)
const;
519 const boost::python::list& data,
520 Assembler_ptr assembler)
const;
529 Assembler_ptr assembler)
const;
534 void addPDEToTransportProblemFromPython(
537 Assembler_ptr assembler)
const;
545 int column_blocksize,
561 virtual void Print_Mesh_Info(
bool full=
false)
const;
571 virtual void write(
const std::string& filename)
const = 0;
577 virtual std::string getDescription()
const = 0;
584 void dump(
const std::string& filename)
const = 0;
591 const index_t* borrowSampleReferenceIDs(
int fsType)
const = 0;
635 virtual void writeBinaryGrid(
const escript::Data& in, std::string filename,
642 virtual bool ownSample(
int fsType,
index_t id)
const = 0;
648 virtual dim_t getNumDataPointsGlobal()
const = 0;
654 virtual const dim_t* getNumNodesPerDim()
const = 0;
660 virtual const dim_t* getNumElementsPerDim()
const = 0;
667 virtual const dim_t* getNumFacesPerBoundary()
const = 0;
673 virtual IndexVector getNodeDistribution()
const = 0;
679 virtual const int* getNumSubdivisionsPerDim()
const = 0;
685 virtual double getLocalCoordinate(
dim_t index,
int dim)
const = 0;
691 virtual boost::python::tuple getGridParameters()
const = 0;
698 virtual bool supportsFilter(
const boost::python::tuple& t)
const;
704 const DataMap& options)
const {
708 Assembler_ptr createAssemblerFromPython(
const std::string type,
709 const boost::python::list& options)
const;
715 virtual const double *
getLength()
const = 0;
740 void updateTagsInUse(
int fsType)
const;
746 void addPoints(
const std::vector<double>& coords,
747 const std::vector<int>& tags);
755 virtual dim_t getNumNodes()
const = 0;
758 virtual dim_t getNumElements()
const = 0;
761 virtual dim_t getNumDOF()
const = 0;
764 virtual void assembleCoordinates(
escript::Data& arg)
const = 0;
777 bool reduced)
const = 0;
783 virtual dim_t getDofOfNode(
dim_t node)
const = 0;
789 virtual void balanceNeighbours(
escript::Data& data,
bool average)
const = 0;
796 const DataMap& coefs, Assembler_ptr assembler)
const;
802 Assembler_ptr assembler)
const;
806 Assembler_ptr assembler)
const;
809 virtual dim_t findNode(
const double *coords)
const = 0;
814 #endif // __Speckley_DOMAIN_H__ AbstractContinuousDomain, base class for continuous domains.
Definition: AbstractContinuousDomain.h:46
std::vector< int > m_elementTagsInUse
Definition: speckley/src/SpeckleyDomain.h:729
Definition: FunctionSpace.h:34
Definition: speckley/src/SpeckleyDomain.h:36
Definition: AbstractAssembler.cpp:22
virtual int getMPIRank() const
returns the MPI rank of this processor
Definition: speckley/src/SpeckleyDomain.h:109
IndexVector m_diracPointNodeIDs
Definition: speckley/src/SpeckleyDomain.h:731
SpeckleyDomain extends the AbstractContinuousDomain interface for the Speckley library and is the bas...
Definition: speckley/src/SpeckleyDomain.h:84
bool probeInterpolationAcross(int fsType_source, const escript::AbstractDomain &domain, int fsType_target, int dim)
Definition: CrossDomainCoupler.cpp:36
virtual int getFunctionOnContactZeroCode() const
return a FunctionOnContactZero code
Definition: speckley/src/SpeckleyDomain.h:409
virtual Assembler_ptr createAssembler(const std::string type, const DataMap &options) const
Definition: speckley/src/SpeckleyDomain.h:703
virtual int getSolutionCode() const
returns a Solution FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:441
StatusType m_status
Definition: speckley/src/SpeckleyDomain.h:725
int getOrder() const
returns the order of the domain
Definition: speckley/src/SpeckleyDomain.h:721
int getLength(const escript::Data *data)
Definition: DataC.cpp:92
virtual int getReducedContinuousFunctionCode() const
returns a continuous on reduced order nodes FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:370
Definition: Speckley.h:44
virtual int getFunctionCode() const
returns a function FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:378
int byteOrder
byte order in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:63
std::map< std::string, escript::Data > DataMap
Definition: speckley/src/domainhelpers.h:24
TagMap m_tagMap
Definition: speckley/src/SpeckleyDomain.h:727
std::vector< double > DoubleVector
Definition: Speckley.h:39
assembler_t assembler_type
Definition: speckley/src/SpeckleyDomain.h:732
std::vector< dim_t > first
the (global) offset into the data object to start writing into
Definition: speckley/src/SpeckleyDomain.h:54
virtual bool operator!=(const escript::AbstractDomain &other) const
inequality operator
Definition: speckley/src/SpeckleyDomain.h:160
virtual int getDim() const
returns the number of spatial dimensions of the domain
Definition: speckley/src/SpeckleyDomain.h:150
#define Speckley_DLL_API
Definition: speckley/src/system_dep.h:22
boost::shared_ptr< AbstractTransportProblem > ATP_ptr
Definition: AbstractTransportProblem.h:162
Structure that wraps parameters for the grid reading routines.
Definition: speckley/src/SpeckleyDomain.h:51
int MPI_Comm
Definition: Esys_MPI.h:38
std::vector< int > m_nodeTagsInUse
Definition: speckley/src/SpeckleyDomain.h:728
int m_order
element order (will be m_order + 1 quad points in each axis)
Definition: speckley/src/SpeckleyDomain.h:734
virtual void setTagMap(const std::string &name, int tag)
sets a map from a clear tag name to a tag key
Definition: speckley/src/SpeckleyDomain.h:186
virtual int getMPISize() const
returns the number of processors used for this domain
Definition: speckley/src/SpeckleyDomain.h:103
std::vector< int > reverse
if non-zero, values are written from last index to first index
Definition: speckley/src/SpeckleyDomain.h:61
A struct to contain a dirac point's information.
Definition: speckley/src/SpeckleyDomain.h:72
Definition: Speckley.h:49
boost::shared_ptr< SubWorld > SubWorld_ptr
Definition: SubWorld.h:142
virtual int getFunctionOnBoundaryCode() const
returns a function on boundary FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:392
Definition: Speckley.h:48
escript::Data readNcGrid(std::string filename, std::string varname, escript::FunctionSpace fs, const object &pyShape, double fill, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:116
Data represents a collection of datapoints.
Definition: Data.h:68
virtual bool onMasterProcessor() const
returns true if on MPI processor 0, else false
Definition: speckley/src/SpeckleyDomain.h:125
Definition: Speckley.h:52
std::vector< index_t > IndexVector
Definition: Speckley.h:38
SpeckleyException exception class.
Definition: SpeckleyException.h:29
int dataType
data type in the file (used by binary reader only)
Definition: speckley/src/SpeckleyDomain.h:65
virtual int getReducedFunctionCode() const
returns a function with reduced integration order FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:384
Definition: Speckley.h:46
virtual void addPDEToTransportProblem(AbstractTransportProblem &tp, escript::Data &source, const escript::Data &M, const escript::Data &A, const escript::Data &B, const escript::Data &C, const escript::Data &D, const escript::Data &X, const escript::Data &Y, const escript::Data &d, const escript::Data &y, const escript::Data &d_contact, const escript::Data &y_contact, const escript::Data &d_dirac, const escript::Data &y_dirac) const
adds a PDE onto a transport problem
Definition: AbstractContinuousDomain.cpp:159
assembler_t
Definition: speckley/src/SpeckleyDomain.h:35
MPI_Comm getMPIComm() const
returns the MPI communicator
Definition: speckley/src/SpeckleyDomain.h:131
escript::Data readBinaryGrid(std::string filename, escript::FunctionSpace fs, const object &pyShape, double fill, int byteOrder, int dataType, const object &pyFirst, const object &pyNum, const object &pyMultiplier, const object &pyReverse)
Definition: speckleycpp.cpp:64
virtual void MPIBarrier() const
if compiled for MPI then executes an MPI_Barrier, else does nothing
Definition: speckley/src/SpeckleyDomain.h:115
virtual int getContinuousFunctionCode() const
returns a continuous FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:364
std::map< std::string, int > simap_t
Definition: speckley/src/SpeckleyDomain.h:44
int index_t
Definition: types.h:24
virtual StatusType getStatus() const
returns a status indicator of the domain. The status identifier should be unique over the lifetime of...
Definition: speckley/src/SpeckleyDomain.h:328
std::map< std::string, int > TagMap
Definition: Speckley.h:41
virtual int getReducedSolutionCode() const
returns a ReducedSolution FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:449
virtual int getReducedFunctionOnContactZeroCode() const
returns a FunctionOnContactZero code with reduced integration order
Definition: speckley/src/SpeckleyDomain.h:417
dim_t node
Definition: speckley/src/SpeckleyDomain.h:74
Give a short description of what AbstractTransportProblem does.
Definition: AbstractTransportProblem.h:45
virtual bool isValidTagName(const std::string &name) const
returns true if name is a defined tag name
Definition: speckley/src/SpeckleyDomain.h:208
index_t dim_t
Definition: types.h:27
virtual int getFunctionOnContactOneCode() const
returns a FunctionOnContactOne code
Definition: speckley/src/SpeckleyDomain.h:425
Base class for escript system matrices.
Definition: AbstractSystemMatrix.h:37
virtual int getApproximationOrder(int fsType) const
returns the approximation order used for a function space
Definition: speckley/src/SpeckleyDomain.h:352
virtual int getTag(const std::string &name) const
returns the tag key for tag name
Definition: speckley/src/SpeckleyDomain.h:195
int m_numDim
Definition: speckley/src/SpeckleyDomain.h:724
std::vector< int > multiplier
Definition: speckley/src/SpeckleyDomain.h:59
std::vector< dim_t > numValues
the number of values to read from file
Definition: speckley/src/SpeckleyDomain.h:56
boost::shared_ptr< AbstractSystemMatrix > ASM_ptr
Definition: AbstractSystemMatrix.h:170
Base class for all escript domains.
Definition: AbstractDomain.h:45
virtual int getReducedFunctionOnBoundaryCode() const
returns a function on boundary with reduced integration order FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:401
int tag
Definition: speckley/src/SpeckleyDomain.h:75
boost::shared_ptr< JMPI_ > JMPI
Definition: Esys_MPI.h:79
esysUtils::JMPI m_mpiInfo
Definition: speckley/src/SpeckleyDomain.h:726
virtual bool supportsContactElements() const
returns true if this domain supports contact elements, false otherwise
Definition: speckley/src/SpeckleyDomain.h:358
std::vector< DiracPoint > m_diracPoints
Definition: speckley/src/SpeckleyDomain.h:730
virtual int getDiracDeltaFunctionsCode() const
returns a DiracDeltaFunctions FunctionSpace code
Definition: speckley/src/SpeckleyDomain.h:457
virtual int getReducedFunctionOnContactOneCode() const
returns a FunctionOnContactOne code with reduced integration order
Definition: speckley/src/SpeckleyDomain.h:433