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Scientific Python
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Module Hierarchy
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Class Hierarchy
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Class Hierarchy
Scientific.IO.PDB.Atom
:
Atom in a PDB structure
Scientific.IO.PDB.HetAtom
:
HetAtom in a PDB structure
Scientific.Signals.Models.AutoRegressiveModel
:
Auto-regressive model for stochastic process
Scientific.Signals.Models.AveragedAutoRegressiveModel
:
Averaged auto-regressive model for stochastic process
Scientific.Visualization.VRML2.Camera
:
Camera/viewpoint for a scene
Scientific.IO.PDB.Chain
:
Chain of PDB residues
Scientific.IO.PDB.NucleotideChain
:
Nucleotide chain in a PDB file
Scientific.IO.PDB.PeptideChain
:
Peptide chain in a PDB file
Scientific.Visualization.Color.Color
:
RGB Color specification
Scientific.Visualization.Color.ColorScale
:
Mapping from a number interval to a color range
Scientific.Functions.Derivatives.DerivVar
:
Numerical variable with automatic derivatives of arbitrary order
Scientific.Functions.FirstDerivatives.DerivVar
:
Numerical variable with automatic derivatives of first order
Scientific.IO.FortranFormat.FortranFormat
:
Parsed Fortran-style format string
Scientific.IO.FortranFormat.FortranLine
:
Fortran-style record in formatted files
Scientific.Geometry.Objects3D.GeometricalObject3D
:
Geometrical object in 3D space
Scientific.Geometry.Objects3D.Circle
:
Circle
Scientific.Geometry.Objects3D.Cone
:
Cone
Scientific.Geometry.Objects3D.Line
:
Line
Scientific.Geometry.Objects3D.Plane
:
Plane
Scientific.Geometry.Objects3D.Sphere
:
Sphere
Scientific.Visualization.VPython.GraphicsObject
:
Graphics object for VPython
Scientific.Visualization.VPython.Material
:
Material specification for graphics objects
Scientific.Visualization.VPython.ShapeObject
:
Graphics objects representing geometrical shapes
Scientific.Visualization.VPython.Arrow
:
Arrow
Scientific.Visualization.VPython.Cone
:
Cone
Scientific.Visualization.VPython.Cube
:
Cube
Scientific.Visualization.VPython.Cylinder
:
Cylinder
Scientific.Visualization.VPython.PolyLines
:
Multiple connected lines
Scientific.Visualization.VPython.Line
:
Line
Scientific.Visualization.VPython.Polygons
:
Polygons
Scientific.Visualization.VPython.Sphere
:
Sphere
Tkinter.Grid
:
Geometry manager Grid.
Tkinter.Widget
:
Internal class.
Tkinter.Frame
:
Frame widget which may contain other widgets and can have a 3D border.
Scientific.TkWidgets.ButtonBar
:
Horizontal array of buttons
Scientific.TkWidgets.FilenameEntry
:
Filename entry widget
Scientific.TkWidgets.FloatEntry
:
Entry field for float numbers
Scientific.TkWidgets.IntEntry
:
Entry field for integer numbers
Scientific.TkWidgets.TkPlotCanvas.PlotCanvas
:
Tk plot widget
Scientific.TkWidgets.StatusBar
:
Status bar
Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas
:
Tk visualization widget
Scientific.Visualization.VRML.Group
:
Base class for composite objects
Scientific.Visualization.VRML.Arrow
:
Arrow
Scientific.Visualization.VRML2.Group
:
Base class for composite objects
Scientific.Visualization.VRML2.Arrow
:
Arrow
Scientific.IO.PDB.Group
:
Atom group (residue or molecule) in a PDB file
Scientific.IO.PDB.Molecule
:
Molecule in a PDB file
Scientific.IO.PDB.Residue
Scientific.IO.PDB.AminoAcidResidue
:
Amino acid residue in a PDB file
Scientific.IO.PDB.NucleotideResidue
:
Nucleotide residue in a PDB file
Scientific.Visualization.VMD.Group
:
Base class for composite objects
Scientific.Visualization.VMD.Arrow
:
Arrow
Scientific.Visualization.PyMOL.Group
:
Base class for composite objects
Scientific.Visualization.PyMOL.Arrow
:
Arrow
Scientific.Visualization.VPython.Group
:
Base class for composite objects
Scientific.Statistics.Histogram.Histogram
:
Histogram in one variable
Scientific.Statistics.Histogram.WeightedHistogram
:
Weighted histogram in one variable
code.InteractiveInterpreter
:
Base class for InteractiveConsole.
code.InteractiveConsole
:
Closely emulate the behavior of the interactive Python interpreter.
Scientific.BSP.Console.ParallelConsole
Scientific.BSP.Console.ParallelInterpreter
Scientific.Functions.Interpolation.InterpolatingFunction
:
Function
defined by values on a
grid
using
interpolation
Scientific.Functions.Interpolation.NetCDFInterpolatingFunction
:
Function defined by values on a grid in a
netCDF
file
Scientific.Geometry.TensorAnalysis.TensorField
:
Tensor field of arbitrary rank
Scientific.Geometry.TensorAnalysis.ScalarField
:
Scalar field (tensor field of rank 0)
Scientific.Geometry.TensorAnalysis.VectorField
:
Vector field (tensor field of rank 1)
Scientific.Geometry.Objects3D.Lattice
Scientific.Geometry.Objects3D.RhombicLattice
:
Lattice with rhombic elementary cell
Scientific.Geometry.Objects3D.BravaisLattice
:
General Bravais lattice
Scientific.Geometry.Objects3D.SCLattice
:
Simple cubic lattice
Scientific.MPI.IO.LogFile
:
File for logging events from all processes
Scientific.MPI.MPICommunicator
:
MPI Communicator
Scientific.MPI.MPIOperationObject
Scientific.MPI.band
:
The 'bitwise and' operation in reduce/allreduce communications.
Scientific.MPI.bor
:
The 'bitwise or' operation in reduce/allreduce communications.
Scientific.MPI.bxor
:
The 'bitwise exclusive-or' operation.
Scientific.MPI.land
:
The 'logical and' operation in reduce/allreduce communications.
Scientific.MPI.lor
:
The 'logical or' operation in reduce/allreduce communications.
Scientific.MPI.lxor
:
The 'logical exclusive-or' operation.
Scientific.MPI.max
:
The 'maximum' operation in reduce/allreduce communications.
Scientific.MPI.maxloc
:
The 'location of the maximum' operation.
Scientific.MPI.min
:
The 'minimum' operation in reduce/allreduce communications.
Scientific.MPI.minloc
:
The 'location of the minimum' operation.
Scientific.MPI.prod
:
The 'product' operation in reduce/allreduce communications.
Scientific.MPI.replace
:
The 'replace' operation.
Scientific.MPI.sum
:
The 'sum' operation in reduce/allreduce communications.
Scientific.MPI.MPIRequest
:
MPI Request
Tkinter.Misc
:
Internal class.
Tkinter.BaseWidget
:
Internal class.
Tkinter.Toplevel
:
Toplevel widget, e.g.
Scientific.TkWidgets.ModalDialog
Tkinter.Widget
:
Internal class.
Tkinter.Frame
:
Frame widget which may contain other widgets and can have a 3D border.
Scientific.TkWidgets.ButtonBar
:
Horizontal array of buttons
Scientific.TkWidgets.FilenameEntry
:
Filename entry widget
Scientific.TkWidgets.FloatEntry
:
Entry field for float numbers
Scientific.TkWidgets.IntEntry
:
Entry field for integer numbers
Scientific.TkWidgets.TkPlotCanvas.PlotCanvas
:
Tk plot widget
Scientific.TkWidgets.StatusBar
:
Status bar
Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas
:
Tk visualization widget
Scientific.Visualization.VRML2.NavigationInfo
:
Navigation information
Scientific.IO.NetCDF.NetCDFFile
:
netCDF
file
Scientific.IO.NetCDF.NetCDFVariable
:
Variable in a netCDF file
Scientific.BSP.Console.OKToken
Pyro.core.ObjBase
Scientific.DistributedComputing.TaskManager.TaskManager
:
Manager for computational tasks.
Scientific.BSP.Console.OutputStream
Scientific.IO.PDB.PDBFile
:
PDB
file with access at the record level
Tkinter.Pack
:
Geometry manager Pack.
Tkinter.Widget
:
Internal class.
Tkinter.Frame
:
Frame widget which may contain other widgets and can have a 3D border.
Scientific.TkWidgets.ButtonBar
:
Horizontal array of buttons
Scientific.TkWidgets.FilenameEntry
:
Filename entry widget
Scientific.TkWidgets.FloatEntry
:
Entry field for float numbers
Scientific.TkWidgets.IntEntry
:
Entry field for integer numbers
Scientific.TkWidgets.TkPlotCanvas.PlotCanvas
:
Tk plot widget
Scientific.TkWidgets.StatusBar
:
Status bar
Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas
:
Tk visualization widget
Scientific.Physics.PhysicalQuantities.PhysicalQuantity
:
Physical quantity with units
Scientific.Physics.PhysicalQuantities.PhysicalUnit
:
Physical unit
Tkinter.Place
:
Geometry manager Place.
Tkinter.Widget
:
Internal class.
Tkinter.Frame
:
Frame widget which may contain other widgets and can have a 3D border.
Scientific.TkWidgets.ButtonBar
:
Horizontal array of buttons
Scientific.TkWidgets.FilenameEntry
:
Filename entry widget
Scientific.TkWidgets.FloatEntry
:
Entry field for float numbers
Scientific.TkWidgets.IntEntry
:
Entry field for integer numbers
Scientific.TkWidgets.TkPlotCanvas.PlotCanvas
:
Tk plot widget
Scientific.TkWidgets.StatusBar
:
Status bar
Scientific.TkWidgets.TkVisualizationCanvas.VisualizationCanvas
:
Tk visualization widget
Scientific.QtWidgets.QtPlotCanvas.PlotGraphics
:
Compound graphics object
Scientific.TkWidgets.TkPlotCanvas.PlotGraphics
:
Compound graphics object
Scientific.QtWidgets.QtPlotCanvas.PolyPoints
Scientific.QtWidgets.QtPlotCanvas.PolyLine
:
Multiple connected lines
Scientific.QtWidgets.QtPlotCanvas.HorizontalLine
:
A horizontal line
Scientific.QtWidgets.QtPlotCanvas.VerticalLine
:
A vertical line
Scientific.QtWidgets.QtPlotCanvas.PolyMarker
:
Series of markers
Scientific.TkWidgets.TkPlotCanvas.PolyPoints
Scientific.TkWidgets.TkPlotCanvas.PolyLine
:
Multiple connected lines
Scientific.TkWidgets.TkPlotCanvas.HorizontalLine
:
A horizontal line
Scientific.TkWidgets.TkPlotCanvas.VerticalLine
:
A vertical line
Scientific.TkWidgets.TkPlotCanvas.PolyMarker
:
Series of markers
Scientific.QtWidgets.QtVisualizationCanvas.PolyPoints3D
Scientific.QtWidgets.QtVisualizationCanvas.PolyLine3D
:
Multiple connected lines
Scientific.TkWidgets.TkVisualizationCanvas.PolyPoints3D
Scientific.TkWidgets.TkVisualizationCanvas.PolyLine3D
:
Multiple connected lines
Scientific.Functions.Polynomial.Polynomial
:
Multivariate
polynomial
Scientific.Physics.Potential.PotentialWithGradients
Scientific.Physics.Potential.PotentialWithGradientsAndForceConstants
Scientific.Visualization.PyMOL.PyMOLObject
:
Graphics object for PyMOL
Scientific.Visualization.PyMOL.Material
:
Material specification for graphics objects
Scientific.Visualization.PyMOL.Molecules
:
Molecules from a PDB file
Scientific.Visualization.PyMOL.ShapeObject
:
Graphics objects representing geometrical shapes
Scientific.Visualization.PyMOL.Cone
:
Cone
Scientific.Visualization.PyMOL.Cube
:
Cube
Scientific.Visualization.PyMOL.Cylinder
:
Cylinder
Scientific.Visualization.PyMOL.Line
:
Line
Scientific.Visualization.PyMOL.Sphere
:
Sphere
Scientific.QtWidgets.qt_fake.QWidget
Scientific.QtWidgets.QtPlotCanvas.PlotCanvas
:
Qt plot widget
Scientific.QtWidgets.QtVisualizationCanvas.VisualizationCanvas
:
Qt visualization widget
Scientific.Geometry.Quaternion.Quaternion
:
Quaternion (hypercomplex number)
Scientific.Functions.Rational.RationalFunction
:
Rational Function
Scientific.IO.PDB.ResidueNumber
:
PDB residue number
Scientific.Visualization.VRML.Scene
:
VRML scene
Scientific.Visualization.VRML2.Scene
:
VRML scene
Scientific.Visualization.VMD.Scene
:
VMD scene
Scientific.Visualization.VPython.Scene
:
VPython scene
Scientific.Visualization.PyMOL.Scene
:
PyMOL scene
Scientific.Visualization.VRML2.SceneFile
Scientific.Visualization.VRML.SceneFile
Scientific.Visualization.VMD.SceneFile
Scientific.IO.PDB.Structure
:
A high-level representation of the contents of a PDB file
Scientific.Visualization.Color.SymmetricColorScale
:
Mapping of a symmetric number interval to a color range
Scientific.Threading.TaskManager.TaskManager
:
Parallel task manager for shared-memory multiprocessor machines
Scientific.Geometry.Tensor
:
Tensor in 3D space
Scientific.IO.TextFile.TextFile
:
Text files with line iteration and transparent compression
Scientific.Geometry.Transformation.Transformation
:
Linear coordinate transformation.
Scientific.Geometry.Transformation.LinearTransformation
:
General linear transformation.
Scientific.Geometry.Transformation.RigidBodyTransformation
:
Combination of translations and rotations
Scientific.Geometry.Transformation.Rotation
:
Rotational transformation
Scientific.Geometry.Transformation.RotationTranslation
:
Combined translational and rotational transformation.
Scientific.Geometry.Transformation.Translation
:
Translational transformation
Scientific.Geometry.Transformation.Scaling
:
Scaling
Scientific.Geometry.Transformation.Inversion
Scientific.Geometry.Transformation.Shear
UserDict.UserDict
Scientific.DictWithDefault.DictWithDefault
:
Dictionary with default values
Scientific.Visualization.VMD.VMDObject
:
Graphics object for VMD
Scientific.Visualization.VMD.Material
:
Material specification for graphics objects
Scientific.Visualization.VMD.Molecules
:
Molecules from a PDB file
Scientific.Visualization.VMD.ShapeObject
:
Graphics objects representing geometrical shapes
Scientific.Visualization.VMD.Cone
:
Cone
Scientific.Visualization.VMD.Cube
:
Cube
Scientific.Visualization.VMD.Cylinder
:
Cylinder
Scientific.Visualization.VMD.Line
:
Line
Scientific.Visualization.VMD.Sphere
:
Sphere
Scientific.Visualization.VRML.VRMLObject
:
Graphics object for VRML
Scientific.Visualization.VRML.Material
:
Material specification for graphics objects
Scientific.Visualization.VRML.ShapeObject
:
Graphics objects representing geometrical shapes
Scientific.Visualization.VRML.Cube
:
Cube
Scientific.Visualization.VRML.Line
:
Line
Scientific.Visualization.VRML.LinearOrientedObject
Scientific.Visualization.VRML.Cone
:
Cone
Scientific.Visualization.VRML.Cylinder
:
Cylinder
Scientific.Visualization.VRML.PolyLines
:
Multiple connected lines
Scientific.Visualization.VRML.Polygons
:
Polygons
Scientific.Visualization.VRML.Sphere
:
Sphere
Scientific.Visualization.VRML2.VRMLObject
:
Graphics object for VRML
Scientific.Visualization.VRML2.Material
:
Material specification for graphics objects
Scientific.Visualization.VRML2.ShapeObject
:
Graphics objects representing geometrical shapes
Scientific.Visualization.VRML2.Cube
:
Cube
Scientific.Visualization.VRML2.Line
:
Line
Scientific.Visualization.VRML2.LinearOrientedObject
Scientific.Visualization.VRML2.Cone
:
Cone
Scientific.Visualization.VRML2.Cylinder
:
Cylinder
Scientific.Visualization.VRML2.PolyLines
:
Multiple connected lines
Scientific.Visualization.VRML2.Polygons
:
Polygons
Scientific.Visualization.VRML2.Sphere
:
Sphere
Scientific.Geometry.Vector
:
Vector in 3D space
Scientific.TkWidgets.TkVisualizationCanvas.VisualizationGraphics
:
Compound graphics object
Scientific.QtWidgets.QtVisualizationCanvas.VisualizationGraphics
:
Compound graphics object
Tkinter.Wm
:
Provides functions for the communication with the window manager.
Tkinter.Toplevel
:
Toplevel widget, e.g.
Scientific.TkWidgets.ModalDialog
object
:
The most base type
exceptions.BaseException
:
Common base class for all exceptions
exceptions.Exception
:
Common base class for all non-exit exceptions.
Scientific.BSP.Console.BSPSyncError
exceptions.StandardError
:
Base class for all standard Python exceptions that do not represent interpreter exiting.
exceptions.ValueError
:
Inappropriate argument value (of correct type).
Scientific.IterationCountExceededError
Scientific.DistributedComputing.TaskManager.TaskManagerTermination
:
Signals that the task manager has no more tasks to handle.
Scientific.DistributedComputing.TaskManager.TaskRaisedException
:
Signals that an exception was raised inside a task.
Scientific.Clustering.AffinityPropagation.DataSet
:
A collection of data items with similarities
Scientific.DistributedComputing.MasterSlave.GlobalStateValue
Scientific.DistributedComputing.MasterSlave.MasterProcess
:
Master process in a master-slave setup
Scientific.BSP.ParBase
:
Distributed data base class
Scientific.BSP.ParClass
:
Global class
Scientific.BSP.ParIndex
:
Parallel index value
Scientific.BSP.ParIndexIterator
:
Parallel index iterator
Scientific.BSP.ParIterator
:
Parallel iterator
Scientific.BSP.ParValue
:
Global data
Scientific.BSP.ParAccumulator
:
Global accumulator
Scientific.BSP.ParConstant
:
Global constant
Scientific.BSP.ParData
:
Global data
Scientific.BSP.ParFunction
:
Global function
Scientific.BSP.ParRootFunction
:
Asymmetric global function
Scientific.BSP.ParMessages
:
Global message list
Scientific.BSP.ParSequence
:
Global distributed sequence
Scientific.BSP.ParRootSequence
:
Global distributed sequence with data taken from processor 0
Scientific.BSP.ParTuple
:
Global data tuple
Scientific.DistributedComputing.MasterSlave.SlaveProcess
:
Slave process in a master-slave setup
Scientific.IO.PDBSpaceGroups.SpaceGroup
Scientific.DistributedComputing.TaskManager.Task
:
Describes a task inside the task manager.
Scientific.DistributedComputing.TaskManager.TaskQueue
:
A FIFO queue for tasks.
Scientific.DistributedComputing.TaskManager.Watchdog
:
A background process that watches compute tasks and unregisters those that do not ping the task manager at the promised interval.
dict
:
dict() -> new empty dictionary.
Scientific.NumberDict.NumberDict
:
Dictionary storing numerical values
float
:
float(x) -> floating point number
int
:
int(x[, base]) -> integer
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