Regression PlotsΒΆ

Link to Notebook GitHub

In [1]:
from __future__ import print_function
from statsmodels.compat import lzip
import numpy as np
import pandas as pd
import matplotlib.pyplot as plt
import statsmodels.api as sm
from statsmodels.formula.api import ols

Duncan's Prestige Dataset

Load the Data

We can use a utility function to load any R dataset available from the great Rdatasets package.

In [2]:
prestige = sm.datasets.get_rdataset("Duncan", "car", cache=True).data
---------------------------------------------------------------------------
URLError                                  Traceback (most recent call last)
<ipython-input-263-d85a43c9ce16> in <module>()
----> 1 prestige = sm.datasets.get_rdataset("Duncan", "car", cache=True).data

/build/statsmodels-ungkPp/statsmodels-0.6.1/debian/python-statsmodels/usr/lib/python2.7/dist-packages/statsmodels/datasets/utils.pyc in get_rdataset(dataname, package, cache)
    284                      "master/doc/"+package+"/rst/")
    285     cache = _get_cache(cache)
--> 286     data, from_cache = _get_data(data_base_url, dataname, cache)
    287     data = read_csv(data, index_col=0)
    288     data = _maybe_reset_index(data)

/build/statsmodels-ungkPp/statsmodels-0.6.1/debian/python-statsmodels/usr/lib/python2.7/dist-packages/statsmodels/datasets/utils.pyc in _get_data(base_url, dataname, cache, extension)
    215     url = base_url + (dataname + ".%s") % extension
    216     try:
--> 217         data, from_cache = _urlopen_cached(url, cache)
    218     except HTTPError as err:
    219         if '404' in str(err):

/build/statsmodels-ungkPp/statsmodels-0.6.1/debian/python-statsmodels/usr/lib/python2.7/dist-packages/statsmodels/datasets/utils.pyc in _urlopen_cached(url, cache)
    206     # not using the cache or didn't find it in cache
    207     if not from_cache:
--> 208         data = urlopen(url).read()
    209         if cache is not None:  # then put it in the cache
    210             _cache_it(data, cache_path)

/usr/lib/python2.7/urllib2.pyc in urlopen(url, data, timeout, cafile, capath, cadefault, context)
    152     else:
    153         opener = _opener
--> 154     return opener.open(url, data, timeout)
    155 
    156 def install_opener(opener):

/usr/lib/python2.7/urllib2.pyc in open(self, fullurl, data, timeout)
    427             req = meth(req)
    428 
--> 429         response = self._open(req, data)
    430 
    431         # post-process response

/usr/lib/python2.7/urllib2.pyc in _open(self, req, data)
    445         protocol = req.get_type()
    446         result = self._call_chain(self.handle_open, protocol, protocol +
--> 447                                   '_open', req)
    448         if result:
    449             return result

/usr/lib/python2.7/urllib2.pyc in _call_chain(self, chain, kind, meth_name, *args)
    405             func = getattr(handler, meth_name)
    406 
--> 407             result = func(*args)
    408             if result is not None:
    409                 return result

/usr/lib/python2.7/urllib2.pyc in https_open(self, req)
   1239         def https_open(self, req):
   1240             return self.do_open(httplib.HTTPSConnection, req,
-> 1241                 context=self._context)
   1242 
   1243         https_request = AbstractHTTPHandler.do_request_

/usr/lib/python2.7/urllib2.pyc in do_open(self, http_class, req, **http_conn_args)
   1196         except socket.error, err: # XXX what error?
   1197             h.close()
-> 1198             raise URLError(err)
   1199         else:
   1200             try:

URLError: <urlopen error [Errno -2] Name or service not known>
In [3]:
prestige.head()
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-264-7610443b87d8> in <module>()
----> 1 prestige.head()

NameError: name 'prestige' is not defined
In [4]:
prestige_model = ols("prestige ~ income + education", data=prestige).fit()
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-265-38390d2a6efb> in <module>()
----> 1 prestige_model = ols("prestige ~ income + education", data=prestige).fit()

NameError: name 'prestige' is not defined
In [5]:
print(prestige_model.summary())
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-266-c5a913848ed3> in <module>()
----> 1 print(prestige_model.summary())

NameError: name 'prestige_model' is not defined

Influence plots

Influence plots show the (externally) studentized residuals vs. the leverage of each observation as measured by the hat matrix.

Externally studentized residuals are residuals that are scaled by their standard deviation where

$$var(\hat{\epsilon}_i)=\hat{\sigma}^2_i(1-h_{ii})$$

with

$$\hat{\sigma}^2_i=\frac{1}{n - p - 1 \;\;}\sum_{j}^{n}\;\;\;\forall \;\;\; j \neq i$$

$n$ is the number of observations and $p$ is the number of regressors. $h_{ii}$ is the $i$-th diagonal element of the hat matrix

$$H=X(X^{\;\prime}X)^{-1}X^{\;\prime}$$

The influence of each point can be visualized by the criterion keyword argument. Options are Cook's distance and DFFITS, two measures of influence.

In [6]:
fig, ax = plt.subplots(figsize=(12,8))
fig = sm.graphics.influence_plot(prestige_model, ax=ax, criterion="cooks")
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-267-0749e516acce> in <module>()
      1 fig, ax = plt.subplots(figsize=(12,8))
----> 2 fig = sm.graphics.influence_plot(prestige_model, ax=ax, criterion="cooks")

NameError: name 'prestige_model' is not defined
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb773b3bbd0>

As you can see there are a few worrisome observations. Both contractor and reporter have low leverage but a large residual.
RR.engineer has small residual and large leverage. Conductor and minister have both high leverage and large residuals, and,
therefore, large influence.

Partial Regression Plots

Since we are doing multivariate regressions, we cannot just look at individual bivariate plots to discern relationships.
Instead, we want to look at the relationship of the dependent variable and independent variables conditional on the other
independent variables. We can do this through using partial regression plots, otherwise known as added variable plots.

In a partial regression plot, to discern the relationship between the response variable and the $k$-th variabe, we compute
the residuals by regressing the response variable versus the independent variables excluding $X_k$. We can denote this by
$X_{\sim k}$. We then compute the residuals by regressing $X_k$ on $X_{\sim k}$. The partial regression plot is the plot
of the former versus the latter residuals.

The notable points of this plot are that the fitted line has slope $\beta_k$ and intercept zero. The residuals of this plot
are the same as those of the least squares fit of the original model with full $X$. You can discern the effects of the
individual data values on the estimation of a coefficient easily. If obs_labels is True, then these points are annotated
with their observation label. You can also see the violation of underlying assumptions such as homooskedasticity and
linearity.

In [7]:
fig, ax = plt.subplots(figsize=(12,8))
fig = sm.graphics.plot_partregress("prestige", "income", ["income", "education"], data=prestige, ax=ax)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-268-2864f1c95632> in <module>()
      1 fig, ax = plt.subplots(figsize=(12,8))
----> 2 fig = sm.graphics.plot_partregress("prestige", "income", ["income", "education"], data=prestige, ax=ax)

NameError: name 'prestige' is not defined
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb77377ae50>
In [8]:
fix, ax = plt.subplots(figsize=(12,14))
fig = sm.graphics.plot_partregress("prestige", "income", ["education"], data=prestige, ax=ax)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-269-1f2024388c0b> in <module>()
      1 fix, ax = plt.subplots(figsize=(12,14))
----> 2 fig = sm.graphics.plot_partregress("prestige", "income", ["education"], data=prestige, ax=ax)

NameError: name 'prestige' is not defined
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb773b1c690>

As you can see the partial regression plot confirms the influence of conductor, minister, and RR.engineer on the partial relationship between income and prestige. The cases greatly decrease the effect of income on prestige. Dropping these cases confirms this.

In [9]:
subset = ~prestige.index.isin(["conductor", "RR.engineer", "minister"])
prestige_model2 = ols("prestige ~ income + education", data=prestige, subset=subset).fit()
print(prestige_model2.summary())
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-270-9f584bb124fd> in <module>()
----> 1 subset = ~prestige.index.isin(["conductor", "RR.engineer", "minister"])
      2 prestige_model2 = ols("prestige ~ income + education", data=prestige, subset=subset).fit()
      3 print(prestige_model2.summary())

NameError: name 'prestige' is not defined

For a quick check of all the regressors, you can use plot_partregress_grid. These plots will not label the
points, but you can use them to identify problems and then use plot_partregress to get more information.

In [10]:
fig = plt.figure(figsize=(12,8))
fig = sm.graphics.plot_partregress_grid(prestige_model, fig=fig)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-271-8a4e78936888> in <module>()
      1 fig = plt.figure(figsize=(12,8))
----> 2 fig = sm.graphics.plot_partregress_grid(prestige_model, fig=fig)

NameError: name 'prestige_model' is not defined
<matplotlib.figure.Figure at 0x7fb773a8a690>

Component-Component plus Residual (CCPR) Plots

The CCPR plot provides a way to judge the effect of one regressor on the
response variable by taking into account the effects of the other
independent variables. The partial residuals plot is defined as
$\text{Residuals} + B_iX_i \text{ }\text{ }$ versus $X_i$. The component adds $B_iX_i$ versus
$X_i$ to show where the fitted line would lie. Care should be taken if $X_i$
is highly correlated with any of the other independent variables. If this
is the case, the variance evident in the plot will be an underestimate of
the true variance.

In [11]:
fig, ax = plt.subplots(figsize=(12, 8))
fig = sm.graphics.plot_ccpr(prestige_model, "education", ax=ax)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-272-5901a40d612c> in <module>()
      1 fig, ax = plt.subplots(figsize=(12, 8))
----> 2 fig = sm.graphics.plot_ccpr(prestige_model, "education", ax=ax)

NameError: name 'prestige_model' is not defined
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb773b71e10>

As you can see the relationship between the variation in prestige explained by education conditional on income seems to be linear, though you can see there are some observations that are exerting considerable influence on the relationship. We can quickly look at more than one variable by using plot_ccpr_grid.

In [12]:
fig = plt.figure(figsize=(12, 8))
fig = sm.graphics.plot_ccpr_grid(prestige_model, fig=fig)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-273-4e390a91d878> in <module>()
      1 fig = plt.figure(figsize=(12, 8))
----> 2 fig = sm.graphics.plot_ccpr_grid(prestige_model, fig=fig)

NameError: name 'prestige_model' is not defined
<matplotlib.figure.Figure at 0x7fb7736b1fd0>

Regression Plots

The plot_regress_exog function is a convenience function that gives a 2x2 plot containing the dependent variable and fitted values with confidence intervals vs. the independent variable chosen, the residuals of the model vs. the chosen independent variable, a partial regression plot, and a CCPR plot. This function can be used for quickly checking modeling assumptions with respect to a single regressor.

In [13]:
fig = plt.figure(figsize=(12,8))
fig = sm.graphics.plot_regress_exog(prestige_model, "education", fig=fig)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-274-8700df56dd99> in <module>()
      1 fig = plt.figure(figsize=(12,8))
----> 2 fig = sm.graphics.plot_regress_exog(prestige_model, "education", fig=fig)

NameError: name 'prestige_model' is not defined
<matplotlib.figure.Figure at 0x7fb773b1c9d0>

Fit Plot

The plot_fit function plots the fitted values versus a chosen independent variable. It includes prediction confidence intervals and optionally plots the true dependent variable.

In [14]:
fig, ax = plt.subplots(figsize=(12, 8))
fig = sm.graphics.plot_fit(prestige_model, "education", ax=ax)
---------------------------------------------------------------------------
NameError                                 Traceback (most recent call last)
<ipython-input-275-b5d620f13255> in <module>()
      1 fig, ax = plt.subplots(figsize=(12, 8))
----> 2 fig = sm.graphics.plot_fit(prestige_model, "education", ax=ax)

NameError: name 'prestige_model' is not defined
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb773693cd0>

Statewide Crime 2009 Dataset

Compare the following to http://www.ats.ucla.edu/stat/stata/webbooks/reg/chapter4/statareg_self_assessment_answers4.htm

Though the data here is not the same as in that example. You could run that example by uncommenting the necessary cells below.

In [15]:
#dta = pd.read_csv("http://www.stat.ufl.edu/~aa/social/csv_files/statewide-crime-2.csv")
#dta = dta.set_index("State", inplace=True).dropna()
#dta.rename(columns={"VR" : "crime",
#                    "MR" : "murder",
#                    "M"  : "pctmetro",
#                    "W"  : "pctwhite",
#                    "H"  : "pcths",
#                    "P"  : "poverty",
#                    "S"  : "single"
#                    }, inplace=True)
#
#crime_model = ols("murder ~ pctmetro + poverty + pcths + single", data=dta).fit()
In [16]:
dta = sm.datasets.statecrime.load_pandas().data
In [17]:
crime_model = ols("murder ~ urban + poverty + hs_grad + single", data=dta).fit()
print(crime_model.summary())
                            OLS Regression Results
==============================================================================
Dep. Variable:                 murder   R-squared:                       0.813
Model:                            OLS   Adj. R-squared:                  0.797
Method:                 Least Squares   F-statistic:                     50.08
Date:                Wed, 27 Apr 2016   Prob (F-statistic):           3.42e-16
Time:                        23:32:16   Log-Likelihood:                -95.050
No. Observations:                  51   AIC:                             200.1
Df Residuals:                      46   BIC:                             209.8
Df Model:                           4
Covariance Type:            nonrobust
==============================================================================
                 coef    std err          t      P>|t|      [95.0% Conf. Int.]
------------------------------------------------------------------------------
Intercept    -44.1024     12.086     -3.649      0.001       -68.430   -19.774
urban          0.0109      0.015      0.707      0.483        -0.020     0.042
poverty        0.4121      0.140      2.939      0.005         0.130     0.694
hs_grad        0.3059      0.117      2.611      0.012         0.070     0.542
single         0.6374      0.070      9.065      0.000         0.496     0.779
==============================================================================
Omnibus:                        1.618   Durbin-Watson:                   2.507
Prob(Omnibus):                  0.445   Jarque-Bera (JB):                0.831
Skew:                          -0.220   Prob(JB):                        0.660
Kurtosis:                       3.445   Cond. No.                     5.80e+03
==============================================================================

Warnings:
[1] Standard Errors assume that the covariance matrix of the errors is correctly specified.
[2] The condition number is large, 5.8e+03. This might indicate that there are
strong multicollinearity or other numerical problems.

Partial Regression Plots

In [18]:
fig = plt.figure(figsize=(12,8))
fig = sm.graphics.plot_partregress_grid(crime_model, fig=fig)
---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
<ipython-input-279-3f3d9fd5d7d3> in <module>()
      1 fig = plt.figure(figsize=(12,8))
----> 2 fig = sm.graphics.plot_partregress_grid(crime_model, fig=fig)

/build/statsmodels-ungkPp/statsmodels-0.6.1/debian/python-statsmodels/usr/lib/python2.7/dist-packages/statsmodels/graphics/regressionplots.pyc in plot_partregress_grid(results, exog_idx, grid, fig)
    461     fig.suptitle("Partial Regression Plot", fontsize="large")
    462 
--> 463     fig.tight_layout()
    464 
    465     fig.subplots_adjust(top=.95)

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in tight_layout(self, renderer, pad, h_pad, w_pad, rect)
   1752                                          renderer,
   1753                                          pad=pad, h_pad=h_pad, w_pad=w_pad,
-> 1754                                          rect=rect)
   1755 
   1756         self.subplots_adjust(**kwargs)

/usr/lib/python2.7/dist-packages/matplotlib/tight_layout.pyc in get_tight_layout_figure(fig, axes_list, subplotspec_list, renderer, pad, h_pad, w_pad, rect)
    347                                      subplot_list=subplot_list,
    348                                      ax_bbox_list=ax_bbox_list,
--> 349                                      pad=pad, h_pad=h_pad, w_pad=w_pad)
    350 
    351     if rect is not None:

/usr/lib/python2.7/dist-packages/matplotlib/tight_layout.pyc in auto_adjust_subplotpars(fig, renderer, nrows_ncols, num1num2_list, subplot_list, ax_bbox_list, pad, h_pad, w_pad, rect)
    124                                                ax_bbox_list,
    125                                                num1num2_list):
--> 126         tight_bbox_raw = union([ax.get_tightbbox(renderer) for ax in subplots])
    127         tight_bbox = TransformedBbox(tight_bbox_raw,
    128                                      fig.transFigure.inverted())

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in get_tightbbox(self, renderer, call_axes_locator)
   3677             bb.append(self._right_title.get_window_extent(renderer))
   3678 
-> 3679         bb_xaxis = self.xaxis.get_tightbbox(renderer)
   3680         if bb_xaxis:
   3681             bb.append(bb_xaxis)

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in get_tightbbox(self, renderer)
   1073         ticks_to_draw = self._update_ticks(renderer)
   1074         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1075                                                                 renderer)
   1076 
   1077         self._update_label_position(ticklabelBoxes, ticklabelBoxes2)

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb77a0a1ed0>
In [19]:
fig, ax = plt.subplots(figsize=(12,8))
fig = sm.graphics.plot_partregress("murder", "hs_grad", ["urban", "poverty", "single"],  ax=ax, data=dta)
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb773d85f90>

Leverage-Resid2 Plot

Closely related to the influence_plot is the leverage-resid2 plot.

In [20]:
fig, ax = plt.subplots(figsize=(8,6))
fig = sm.graphics.plot_leverage_resid2(crime_model, ax=ax)
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb773a00810>

Influence Plot

In [21]:
fig, ax = plt.subplots(figsize=(8,6))
fig = sm.graphics.influence_plot(crime_model, ax=ax)
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb77354bf10>

Using robust regression to correct for outliers.

Part of the problem here in recreating the Stata results is that M-estimators are not robust to leverage points. MM-estimators should do better with this examples.

In [22]:
from statsmodels.formula.api import rlm
In [23]:
rob_crime_model = rlm("murder ~ urban + poverty + hs_grad + single", data=dta,
                      M=sm.robust.norms.TukeyBiweight(3)).fit(conv="weights")
print(rob_crime_model.summary())
                    Robust linear Model Regression Results
==============================================================================
Dep. Variable:                 murder   No. Observations:                   51
Model:                            RLM   Df Residuals:                       46
Method:                          IRLS   Df Model:                            4
Norm:                   TukeyBiweight
Scale Est.:                       mad
Cov Type:                          H1
Date:                Wed, 27 Apr 2016
Time:                        23:32:19
No. Iterations:                    50
==============================================================================
                 coef    std err          z      P>|z|      [95.0% Conf. Int.]
------------------------------------------------------------------------------
Intercept     -4.2986      9.494     -0.453      0.651       -22.907    14.310
urban          0.0029      0.012      0.241      0.809        -0.021     0.027
poverty        0.2753      0.110      2.499      0.012         0.059     0.491
hs_grad       -0.0302      0.092     -0.328      0.743        -0.211     0.150
single         0.2902      0.055      5.253      0.000         0.182     0.398
==============================================================================

If the model instance has been used for another fit with different fit
parameters, then the fit options might not be the correct ones anymore .

In [24]:
#rob_crime_model = rlm("murder ~ pctmetro + poverty + pcths + single", data=dta, M=sm.robust.norms.TukeyBiweight()).fit(conv="weights")
#print(rob_crime_model.summary())

There isn't yet an influence diagnostics method as part of RLM, but we can recreate them. (This depends on the status of issue #888)

In [25]:
weights = rob_crime_model.weights
idx = weights > 0
X = rob_crime_model.model.exog[idx.values]
ww = weights[idx] / weights[idx].mean()
hat_matrix_diag = ww*(X*np.linalg.pinv(X).T).sum(1)
resid = rob_crime_model.resid
resid2 = resid**2
resid2 /= resid2.sum()
nobs = int(idx.sum())
hm = hat_matrix_diag.mean()
rm = resid2.mean()
In [26]:
from statsmodels.graphics import utils
fig, ax = plt.subplots(figsize=(12,8))
ax.plot(resid2[idx], hat_matrix_diag, 'o')
ax = utils.annotate_axes(range(nobs), labels=rob_crime_model.model.data.row_labels[idx],
                    points=lzip(resid2[idx], hat_matrix_diag), offset_points=[(-5,5)]*nobs,
                    size="large", ax=ax)
ax.set_xlabel("resid2")
ax.set_ylabel("leverage")
ylim = ax.get_ylim()
ax.vlines(rm, *ylim)
xlim = ax.get_xlim()
ax.hlines(hm, *xlim)
ax.margins(0,0)
Error in callback <function post_execute at 0x7fb786441500> (for post_execute):

---------------------------------------------------------------------------
RuntimeError                              Traceback (most recent call last)
/usr/lib/python2.7/dist-packages/matplotlib/pyplot.pyc in post_execute()
    145             def post_execute():
    146                 if matplotlib.is_interactive():
--> 147                     draw_all()
    148 
    149             # IPython >= 2

/usr/lib/python2.7/dist-packages/matplotlib/_pylab_helpers.pyc in draw_all(cls, force)
    148         for f_mgr in cls.get_all_fig_managers():
    149             if force or f_mgr.canvas.figure.stale:
--> 150                 f_mgr.canvas.draw_idle()
    151 
    152 atexit.register(Gcf.destroy_all)

/usr/lib/python2.7/dist-packages/matplotlib/backend_bases.pyc in draw_idle(self, *args, **kwargs)
   2024         if not self._is_idle_drawing:
   2025             with self._idle_draw_cntx():
-> 2026                 self.draw(*args, **kwargs)
   2027 
   2028     def draw_cursor(self, event):

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in draw(self)
    472 
    473         try:
--> 474             self.figure.draw(self.renderer)
    475         finally:
    476             RendererAgg.lock.release()

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/figure.pyc in draw(self, renderer)
   1157         dsu.sort(key=itemgetter(0))
   1158         for zorder, a, func, args in dsu:
-> 1159             func(*args)
   1160 
   1161         renderer.close_group('figure')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axes/_base.pyc in draw(self, renderer, inframe)
   2322 
   2323         for zorder, a in dsu:
-> 2324             a.draw(renderer)
   2325 
   2326         renderer.close_group('axes')

/usr/lib/python2.7/dist-packages/matplotlib/artist.pyc in draw_wrapper(artist, renderer, *args, **kwargs)
     59     def draw_wrapper(artist, renderer, *args, **kwargs):
     60         before(artist, renderer)
---> 61         draw(artist, renderer, *args, **kwargs)
     62         after(artist, renderer)
     63 

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in draw(self, renderer, *args, **kwargs)
   1106         ticks_to_draw = self._update_ticks(renderer)
   1107         ticklabelBoxes, ticklabelBoxes2 = self._get_tick_bboxes(ticks_to_draw,
-> 1108                                                                 renderer)
   1109 
   1110         for tick in ticks_to_draw:

/usr/lib/python2.7/dist-packages/matplotlib/axis.pyc in _get_tick_bboxes(self, ticks, renderer)
   1056         for tick in ticks:
   1057             if tick.label1On and tick.label1.get_visible():
-> 1058                 extent = tick.label1.get_window_extent(renderer)
   1059                 ticklabelBoxes.append(extent)
   1060             if tick.label2On and tick.label2.get_visible():

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in get_window_extent(self, renderer, dpi)
    959             raise RuntimeError('Cannot get window extent w/o renderer')
    960 
--> 961         bbox, info, descent = self._get_layout(self._renderer)
    962         x, y = self.get_unitless_position()
    963         x, y = self.get_transform().transform_point((x, y))

/usr/lib/python2.7/dist-packages/matplotlib/text.pyc in _get_layout(self, renderer)
    350         tmp, lp_h, lp_bl = renderer.get_text_width_height_descent('lp',
    351                                                          self._fontproperties,
--> 352                                                          ismath=False)
    353         offsety = (lp_h - lp_bl) * self._linespacing
    354 

/usr/lib/python2.7/dist-packages/matplotlib/backends/backend_agg.pyc in get_text_width_height_descent(self, s, prop, ismath)
    227             fontsize = prop.get_size_in_points()
    228             w, h, d = texmanager.get_text_width_height_descent(s, fontsize,
--> 229                                                                renderer=self)
    230             return w, h, d
    231 

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in get_text_width_height_descent(self, tex, fontsize, renderer)
    673         else:
    674             # use dviread. It sometimes returns a wrong descent.
--> 675             dvifile = self.make_dvi(tex, fontsize)
    676             dvi = dviread.Dvi(dvifile, 72 * dpi_fraction)
    677             try:

/usr/lib/python2.7/dist-packages/matplotlib/texmanager.pyc in make_dvi(self, tex, fontsize)
    420                      'string:\n%s\nHere is the full report generated by '
    421                      'LaTeX: \n\n' % repr(tex.encode('unicode_escape')) +
--> 422                      report))
    423             else:
    424                 mpl.verbose.report(report, 'debug')

RuntimeError: LaTeX was not able to process the following string:
'lp'
Here is the full report generated by LaTeX:

<matplotlib.figure.Figure at 0x7fb7735873d0>